Bioinformatics@Becker

Updates and Musings from the Bioinformatics team at Becker Medical Library


Entries Tagged as 'bioinformatics'

List of bioinformatics workshops/training materials

April 4th, 2013 by Kristi · No Comments

Stephen Turner listed a great selection of resources, courses, and training opportunities on his blog, Getting Genetics Done. Among the things listed are online and in-person training sessions, as well as a host of other awesome resources. Thanks, Stephen!

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Tags:2013, bioinformatics, research, tutorial

Bioinformatics resources

February 10th, 2013 by Kristi · No Comments

I’ve stumbled upon a few interesting resources lately that are worth sharing: PLOS Computational Biology: Translational Bioinformatics – a great introduction to so many valuable topics ‘Translational Bioinformatics’ is a collection of PLOS Computational Biology Education articles which reads as a “book” to be used as a reference or tutorial for a graduate level introductory [...]

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Tags:2013, bioinformatics

Sign up for JMP Genomics training at Washington University in February

January 10th, 2013 by Kristi · No Comments

Scientists from SAS Institute will be at WUSM providing JMP Genomics training on Feb 13th, 2013. Training will be held in FLTC 404 A&B. This will be a hands-on workshop using JMP Genomics, version 6.0. Data will be provided. Please bring your own laptop with JMP Genomics 6.0 installed. Download JMP Genomics 6.0. Please download [...]

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Tags:2013, bioinformatics, genomics, informatics, Information, JMP Genomics, tutorial, Washington University

NCBI and IPv6

February 21st, 2012 by Kristi · No Comments

From NCBI: NCBI now supports IPv6 (beta) for data downloads at http://bit.ly/xiQAsj. More information at  http://1.usa.gov/x655AL . Please note that NCBI will be taking part in the World IPv6 Launch (http://www.worldipv6launch.org/). On that day (currently anticipated as June 6, 2012), we plan to add IPv6 service to our main FTP Server (http://bit.ly/yerWAX) and shortly thereafter [...]

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Tags:2012, bioinformatics, Information, NCBI, research, science

Tutorials and lecture materials from NCBI and NHGRI

November 30th, 2011 by Kristi · No Comments

I am constantly surprised by the amount of great instructional material available in topics related to genomics and bioinformatics. It is unfortunate that there isn’t a “master list” somewhere of all of the instructional available from NIH-related efforts (hint hint). Until that happens, I’ll try to share resources as I find them. Here are some [...]

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Tags:bioinformatics, BLAST, course, data, database, education, genetic, genome, genomics, informatics, Information, NCBI, NHGRI, research, science, tool, tutorial

Worthwhile reads in bioinformatics…

November 21st, 2011 by Kristi · No Comments

Just wanted to share some excellent resources in bioinformatics that I happened to catch on Twitter this morning. Both are dedicated issues and both are freely available online (yay!): The BioMart Virtual Issue from Database: The Journal of Biological Databases and Curation (HT @emblebi). If you haven’t had a chance to play with BioMart, please [...]

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Tags:bioinformatics, EBI, genome browser, informatics, Information, journal

Webinar: World Tour of Genomics Resources

November 1st, 2011 by Kristi · No Comments

Webinar: Thursday, November 10th, 10:00 PST/1:00 EST Registration: http://www.openhelix.com/cgi/webinarInfo.cgi?id=33 There are thousands of bioinformatics and genomics resources that are free and publicly accessible. However, trying to find the right resource for your need, and learn how to use the often complex features and functions can be difficult. Come explore ways that you can quickly find [...]

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Tags:bioinformatics, genomics, helpful, Information, resources, science, software, Washington University, webinar

Partek Training Workshops to be offered in September

September 12th, 2011 by Kristi · No Comments

Partek will provide a day long in-depth training course of the Partek GS software package in Room 602 of the Farrell Learning and Teaching Center on September 22, 2011. Next Generation Sequencing Data Analysis in Partek Genomics Suite Software The class will cover the alignment using Partek Flow, BAM file import in Partek Genomic Suite, [...]

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Tags:bioinformatics, genomics, informatics, software, tutorial, Washington University

TOP 10: general things to consider when thinking about data and your work in the lab

August 29th, 2011 by Kristi · No Comments

10 – Scope: What are you looking for? 9 – Data quality: Depends heavily on data curation, validation can be difficult (huge range) 8 – Freshness of data: Well-maintained databases with current information can indicate a higher quality database 7 – Data quantity:Never assume completeness of a data set 6 – Availability:Beware of download restrictions [...]

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Tags:2011, bioinformatics, data

NCBI C++ Toolkit v7.0.0 available

June 28th, 2011 by Kristi · No Comments

From NCBI: The NCBI C++ Toolkit v7.0.0 is now available from the FTP site. The Toolkit contains C++ language sources of NCBI software that can be used to build standalone BLAST, Sequin, Cn3D, and other NCBI tools and utilities. Also check out the The NCBI C++ Toolkit Book, Edited by Denis Vakatov, on the NCBI [...]

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Tags:2011, bioinformatics, BLAST, genomics, informatics, Information, NCBI, NIH, research, software